Skip to content

Commit

Permalink
Re-run revdep checks
Browse files Browse the repository at this point in the history
  • Loading branch information
hadley committed May 15, 2019
1 parent 9e4aaf8 commit ac211b3
Show file tree
Hide file tree
Showing 4 changed files with 221 additions and 1,002 deletions.
17 changes: 11 additions & 6 deletions cran-comments.md
Original file line number Diff line number Diff line change
@@ -1,7 +1,3 @@
This is a resubmission removing a broken link.

---

## Test environments

* local: darwin15.6.0-3.5.2
Expand All @@ -13,6 +9,15 @@ This is a resubmission removing a broken link.

0 errors | 0 warnings | 0 notes

## Reverse dependencies
## revdepcheck results

We checked 111 reverse dependencies (105 from CRAN + 6 from BioConductor), comparing R CMD check results across CRAN and dev versions of this package.

* We saw 0 new problems
* We failed to check 1 packages

Issues with CRAN packages are summarised below.

### Failed to check

Reflexivity in digital anthropology.
* petro.One (NA)
157 changes: 29 additions & 128 deletions revdep/README.md
Original file line number Diff line number Diff line change
Expand Up @@ -10,141 +10,42 @@
|collate |en_US.UTF-8 |
|ctype |en_US.UTF-8 |
|tz |America/Chicago |
|date |2019-03-29 |
|date |2019-05-15 |

# Dependencies

|package |old |new |Δ |
|:-------|:-----|:----------|:--|
|rvest |0.3.2 |0.3.2.9000 |* |
|glue |NA |1.3.1 |* |
|Rcpp |NA |1.0.1 |* |
|stringi |NA |1.4.3 |* |
|package |old |new |Δ |
|:--------|:-----|:----------|:--|
|rvest |0.3.3 |0.3.3.9000 |* |
|askpass |1.1 |1.1 | |
|curl |3.3 |3.3 | |
|glue |1.3.1 |1.3.1 | |
|httr |1.4.0 |1.4.0 | |
|jsonlite |1.6 |1.6 | |
|magrittr |1.5 |1.5 | |
|mime |0.6 |0.6 | |
|openssl |1.3 |1.3 | |
|R6 |2.4.0 |2.4.0 | |
|Rcpp |1.0.1 |1.0.1 | |
|selectr |0.4-1 |0.4-1 | |
|stringi |1.4.3 |1.4.3 | |
|stringr |1.4.0 |1.4.0 | |
|sys |3.2 |3.2 | |
|xml2 |1.2.0 |1.2.0 | |

# Revdeps

## Couldn't check (4)
## Failed to check (3)

|package |version |error |warning |note |
|:----------------------------------------|:-------|:-----|:-------|:----|
|[BIOMASS](problems.md#biomass) |2.1 |1 | | |
|[ELMER](problems.md#elmer) |2.6.2 |1 | | |
|[petro.One](problems.md#petroone) |0.2.3 |1 | | |
|[TCGAbiolinks](problems.md#tcgabiolinks) |2.10.5 |1 | | |
|package |version |error |warning |note |
|:------------|:-------|:-----|:-------|:----|
|ELMER |2.6.3 |1 | | |
|petro.One |0.2.3 |1 | | |
|TCGAbiolinks |2.10.5 |1 | | |

## All (111)
## New problems (1)

|package |version |error |warning |note |
|:------------------------------------------------------|:-------|:-----|:-------|:----|
|addinslist |0.2 | | | |
|adjustedcranlogs |0.1.0 | | | |
|[aire.zmvm](problems.md#airezmvm) |0.8.1 | | |1 |
|[AMR](problems.md#amr) |0.6.1 | | |3 |
|ari |0.1.0 | | | |
|ballr |0.2.3 | | | |
|[BANEScarparkinglite](problems.md#banescarparkinglite) |0.1.2 | | |1 |
|[banxicoR](problems.md#banxicor) |0.9.0 | | |1 |
|baseballDBR |0.1.2 | | | |
|BatchGetSymbols |2.4 | | | |
|BAwiR |1.2 | | | |
|BETS |0.4.9 | | | |
|[BiocPkgTools](problems.md#biocpkgtools) |1.0.3 | | |2 |
|[BioInstaller](problems.md#bioinstaller) |0.3.7 | | |1 |
|[BIOMASS](problems.md#biomass) |2.1 |1 | | |
|BIS |0.2.1 | | | |
|BMRBr |0.2.0 | | | |
|bomrang |0.5.0 | | | |
|boxoffice |1.2.1 | | | |
|cansim |0.2.3 | | | |
|coalitions |0.6.5 | | | |
|cptec |0.1.0 | | | |
|crypto |1.1.1 | | | |
|[ctrdata](problems.md#ctrdata) |0.17.0 |1 | | |
|[datasus](problems.md#datasus) |0.4.1 | | |1 |
|ecoseries |0.1.5 | | | |
|[EdSurvey](problems.md#edsurvey) |2.2.3 | | |1 |
|[ELMER](problems.md#elmer) |2.6.2 |1 | | |
|epidata |0.2.0 | | | |
|essurvey |1.0.2 | | | |
|etl |0.3.7 | | | |
|[eurostat](problems.md#eurostat) |3.3.1.3 | | |1 |
|[ezpickr](problems.md#ezpickr) |1.0.4 | | |1 |
|fastqcr |0.1.2 | | | |
|[fedregs](problems.md#fedregs) |0.1.1 | | |1 |
|finreportr |1.0.1 | | | |
|foghorn |1.1.0 | | | |
|forestChange |0.5 | | | |
|fuzzyjoin |0.1.4 | | | |
|ganalytics |0.10.7 | | | |
|gcite |0.10.1 | | | |
|genius |0.0.1.0 | | | |
|geniusr |1.1.0 | | | |
|gesis |0.2.1 | | | |
|[gfer](problems.md#gfer) |0.1.10 | | |1 |
|googleformr |0.0.3 | | | |
|googleLanguageR |0.2.0 | | | |
|[helminthR](problems.md#helminthr) |1.0.7 | | |1 |
|htmltidy |0.4.0 | | | |
|[ICD10gm](problems.md#icd10gm) |1.0.3 | | |2 |
|icpsrdata |0.3.0 | | | |
|[iemiscdata](problems.md#iemiscdata) |0.6.1 | | |2 |
|[incadata](problems.md#incadata) |0.6.4 | | |1 |
|[jpndistrict](problems.md#jpndistrict) |0.3.2 | | |1 |
|kableExtra |1.1.0 | | | |
|[KDViz](problems.md#kdviz) |1.3.1 | | |1 |
|MazamaSpatialUtils |0.6.1 | | | |
|[newsanchor](problems.md#newsanchor) |0.1.0 | | |2 |
|nhanesA |0.6.5 | | | |
|nhdR |0.5.1 | | | |
|noaaoceans |0.1.0 | | | |
|osmdata |0.0.10 | | | |
|pedquant |0.1.0 | | | |
|[petro.One](problems.md#petroone) |0.2.3 |1 | | |
|pewdata |0.2.0 | | | |
|postlightmercury |1.2 | | | |
|[prisonbrief](problems.md#prisonbrief) |0.1.0 | | |1 |
|[radtools](problems.md#radtools) |1.0.4 |1 | |1 |
|[raustats](problems.md#raustats) |0.1.0 | | |1 |
|[rccmisc](problems.md#rccmisc) |0.3.7 | | |1 |
|readOffice |0.2.2 | | | |
|rex |1.1.2 | | | |
|[rmd](problems.md#rmd) |0.1.4 | | |1 |
|RNHANES |1.1.0 | | | |
|Rnightlights |0.2.3 | | | |
|rNOMADS |2.4.1 | | | |
|RNRCS |0.2.5 | | | |
|ropercenter |0.2.0 | | | |
|rscopus |0.6.3 | | | |
|[RTCGA](problems.md#rtcga) |1.12.1 |2 | |3 |
|[rtrek](problems.md#rtrek) |0.2.0 | | |2 |
|rUnemploymentData |1.1.0 | | | |
|[rzeit2](problems.md#rzeit2) |0.2.3 | | |1 |
|[SanFranBeachWater](problems.md#sanfranbeachwater) |0.1.0 | | |1 |
|scholar |0.1.7 | | | |
|[sejmRP](problems.md#sejmrp) |1.3.4 | | |1 |
|sharpshootR |1.0 | | | |
|[sidrar](problems.md#sidrar) |0.2.4 | | |1 |
|smapr |0.2.0 | | | |
|snotelr |1.0.1 | | | |
|soilDB |2.3.5 | | | |
|speaq |2.5.0 | | | |
|spotifyr |2.1.0 | | | |
|[stlcsb](problems.md#stlcsb) |0.1.2 | | |1 |
|[TCGAbiolinks](problems.md#tcgabiolinks) |2.10.5 |1 | | |
|[TCGAbiolinksGUI](problems.md#tcgabiolinksgui) |1.8.1 |1 | | |
|[TCGAutils](problems.md#tcgautils) |1.2.2 |1 |1 |2 |
|[textreadr](problems.md#textreadr) |0.9.0 | | |1 |
|tidycensus |0.9 | | | |
|[tidyverse](problems.md#tidyverse) |1.2.1 | | |1 |
|tiobeindexr |0.1.1 | | | |
|tm.plugin.factiva |1.7 | | | |
|traits |0.3.0 | | | |
|[unpivotr](problems.md#unpivotr) |0.5.0 |2 |1 | |
|[waccR](problems.md#waccr) |0.1.0 | | |1 |
|webchem |0.4.0 | | | |
|WikidataQueryServiceR |0.1.1 | | | |
|[wikilake](problems.md#wikilake) |0.4 | | |1 |
|wikipediatrend |1.1.14 | | | |
|wikisourcer |0.1.3 | | | |
|[ztype](problems.md#ztype) |0.1.0 | | |1 |
|package |version |error |warning |note |
|:----------------------------------------------------|:-------|:-----|:-------|:------|
|[MazamaSpatialUtils](problems.md#mazamaspatialutils) |0.6.1 | | |__+1__ |

168 changes: 168 additions & 0 deletions revdep/failures.md
Original file line number Diff line number Diff line change
@@ -0,0 +1,168 @@
# ELMER

<details>

* Version: 2.6.3
* Source code: https://github.com/cran/ELMER
* Date/Publication: 2019-04-02
* Number of recursive dependencies: 211

Run `revdep_details(,"ELMER")` for more info

</details>

## In both

* checking whether package ‘ELMER’ can be installed ... ERROR
```
Installation failed.
See ‘/Users/hadley/Documents/tidyverse/rvest/revdep/checks.noindex/ELMER/new/ELMER.Rcheck/00install.out’ for details.
```
## Installation
### Devel
```
* installing *source* package ‘ELMER’ ...
** R
** inst
** byte-compile and prepare package for lazy loading
Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) :
there is no package called 'sesameData'
ERROR: lazy loading failed for package 'ELMER'
* removing '/Users/hadley/Documents/tidyverse/rvest/revdep/checks.noindex/ELMER/new/ELMER.Rcheck/ELMER'

```
### CRAN
```
* installing *source* package ‘ELMER’ ...
** R
** inst
** byte-compile and prepare package for lazy loading
Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) :
there is no package called 'sesameData'
ERROR: lazy loading failed for package 'ELMER'
* removing '/Users/hadley/Documents/tidyverse/rvest/revdep/checks.noindex/ELMER/old/ELMER.Rcheck/ELMER'

```
# petro.One
<details>
* Version: 0.2.3
* Source code: https://github.com/cran/petro.One
* URL: https://github.com/f0nzie/petro.One
* Date/Publication: 2019-01-13 16:20:03 UTC
* Number of recursive dependencies: 81
Run `revdep_details(,"petro.One")` for more info
</details>
## In both
* checking whether package ‘petro.One’ can be installed ... ERROR
```
Installation failed.
See ‘/Users/hadley/Documents/tidyverse/rvest/revdep/checks.noindex/petro.One/new/petro.One.Rcheck/00install.out’ for details.
```
## Installation
### Devel
```
* installing *source* package ‘petro.One’ ...
** package ‘petro.One’ successfully unpacked and MD5 sums checked
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
Error : .onLoad failed in loadNamespace() for 'rJava', details:
call: dyn.load(file, DLLpath = DLLpath, ...)
error: unable to load shared object '/Users/hadley/Documents/tidyverse/rvest/revdep/library.noindex/petro.One/rJava/libs/rJava.so':
dlopen(/Users/hadley/Documents/tidyverse/rvest/revdep/library.noindex/petro.One/rJava/libs/rJava.so, 6): Library not loaded: /Library/Java/JavaVirtualMachines/jdk-11.0.1.jdk/Contents/Home/lib/server/libjvm.dylib
Referenced from: /Users/hadley/Documents/tidyverse/rvest/revdep/library.noindex/petro.One/rJava/libs/rJava.so
Reason: image not found
ERROR: lazy loading failed for package ‘petro.One’
* removing ‘/Users/hadley/Documents/tidyverse/rvest/revdep/checks.noindex/petro.One/new/petro.One.Rcheck/petro.One’

```
### CRAN
```
* installing *source* package ‘petro.One’ ...
** package ‘petro.One’ successfully unpacked and MD5 sums checked
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
Error : .onLoad failed in loadNamespace() for 'rJava', details:
call: dyn.load(file, DLLpath = DLLpath, ...)
error: unable to load shared object '/Users/hadley/Documents/tidyverse/rvest/revdep/library.noindex/petro.One/rJava/libs/rJava.so':
dlopen(/Users/hadley/Documents/tidyverse/rvest/revdep/library.noindex/petro.One/rJava/libs/rJava.so, 6): Library not loaded: /Library/Java/JavaVirtualMachines/jdk-11.0.1.jdk/Contents/Home/lib/server/libjvm.dylib
Referenced from: /Users/hadley/Documents/tidyverse/rvest/revdep/library.noindex/petro.One/rJava/libs/rJava.so
Reason: image not found
ERROR: lazy loading failed for package ‘petro.One’
* removing ‘/Users/hadley/Documents/tidyverse/rvest/revdep/checks.noindex/petro.One/old/petro.One.Rcheck/petro.One’

```
# TCGAbiolinks
<details>
* Version: 2.10.5
* Source code: https://github.com/cran/TCGAbiolinks
* URL: https://github.com/BioinformaticsFMRP/TCGAbiolinks
* BugReports: https://github.com/BioinformaticsFMRP/TCGAbiolinks/issues
* Date/Publication: 2019-03-20
* Number of recursive dependencies: 248
Run `revdep_details(,"TCGAbiolinks")` for more info
</details>
## In both
* checking whether package ‘TCGAbiolinks’ can be installed ... ERROR
```
Installation failed.
See ‘/Users/hadley/Documents/tidyverse/rvest/revdep/checks.noindex/TCGAbiolinks/new/TCGAbiolinks.Rcheck/00install.out’ for details.
```
## Installation
### Devel
```
* installing *source* package ‘TCGAbiolinks’ ...
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) :
there is no package called ‘sesameData’
ERROR: lazy loading failed for package ‘TCGAbiolinks’
* removing ‘/Users/hadley/Documents/tidyverse/rvest/revdep/checks.noindex/TCGAbiolinks/new/TCGAbiolinks.Rcheck/TCGAbiolinks’

```
### CRAN
```
* installing *source* package ‘TCGAbiolinks’ ...
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) :
there is no package called ‘sesameData’
ERROR: lazy loading failed for package ‘TCGAbiolinks’
* removing ‘/Users/hadley/Documents/tidyverse/rvest/revdep/checks.noindex/TCGAbiolinks/old/TCGAbiolinks.Rcheck/TCGAbiolinks’

```
Loading

0 comments on commit ac211b3

Please sign in to comment.