Differential Expression Analysis tool box R lang package for omics data

An R package to plot interactive three-way differential expression analysis

A Snakemake workflow and MrBiomics module for performing and visualizing differential (expression) analyses (DEA) on NGS data powered by the R package limma.

R package that performs sparse factor analysis and differential gene expression discovery simultaneously on single-cell CRISPR screening data.

A Snakemake workflow and MrBiomics module for performing differential expression analyses (DEA) on (multimodal) sc/snRNA-seq data powered by the R package Seurat.

Approaches to identify Differential Rhythmicity

An awesome Oxford Nanopore Pipeline for direct RNA-sequencing

Software for intuitively doing Differential Gene Expression (DGE) analysis on Windows and GNU\Linux, based on R packages.

Material used for a course on transcriptomics, covering transcriptome assembly, transcriptome functional annotation, differential expression analysis, and functional annotation data mining

A library for differential expression and gene set enrichment analysis based on hydra and pydantic.

GWAS of Postmortem Brain Samples Sheds Light on the Development of Schizophrenia and Bipolar Disorder

Performing RNA-Seq data analysis and quality control using DESeq2 in R.

Multi-omics differential expression and integration using PPI networks

Analysis of data from GEO

RNA-Seq analysis pipeline for investigating transcriptional changes during mammalian cardiac regeneration.

Method of Combined P-value to identify Differential Expressed Gene in dataset

RNA-Seq Data Analysis in R: From Raw Counts to Differential Expression Analysis

MICTI- Marker gene Identification for Cell Type Identity

Differential gene expression analysis exercise for the course Analytical Methods in Cancer Genomics 2023. The goal is to perform analysis of RNA-Seq data.