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Fix README rst table (#101)
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yunhailuo authored Aug 24, 2019
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Expand Up @@ -251,7 +251,7 @@ Advanced usage with XenaDataset and its subclasses
+-------------------+--------------------------------------------------------------------------------------------------------------------------------------------------------+------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------+------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------+
| raws2matrix | Used by the ``transform`` method and responsible for both merging multiple GDC raw data into one Xena matrix and processing new Xena matrix as needed. | ``callable``: takes only 1 list of ``read_raw`` returns as its argument and returns an object (usually a pandas DataFrame) which has a ``to_csv`` method for saving as a file. | Check `GDC genomic transform settings`_ for details |
+-------------------+--------------------------------------------------------------------------------------------------------------------------------------------------------+------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------+------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------+
| metadata_template | Used by the ``metadata`` method for rendering metadata by Jinja2. | ``jinja2.environment.Template`` or ``str``: a ``jinja2.environment.Template`` used directly by Jinja2; if it's a string, it is a path to the template file which will be silently read and converted to ``jinja2.environment.Template``. | `Resources <https://github.com/ucscXena/xena-GDC-ETL/blob/master/Resources>`_ |
| metadata_template | Used by the ``metadata`` method for rendering metadata by Jinja2. | ``jinja2.environment.Template`` or ``str``: a ``jinja2.environment.Template`` used directly by Jinja2; if it's a string, it is a path to the template file which will be silently read and converted to ``jinja2.environment.Template``. | `Resources <https://github.com/ucscXena/xena-GDC-ETL/blob/master/Resources>`_ |
+-------------------+--------------------------------------------------------------------------------------------------------------------------------------------------------+------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------+------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------+
| metadata_vars | Used by the ``metadata`` method for rendering metadata by Jinja2. | ``dict``: used directly by Jinja2 which should match variables in ``metadata_template``. | :: |
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