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Jenkins install build 1639.
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galaxy-au-tools-jenkins-bot committed Sep 30, 2024
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1 change: 1 addition & 0 deletions automated_tool_installation_log.tsv
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Expand Up @@ -7834,3 +7834,4 @@ Update 211 25/09/24 14:01:36 ucsc_wigtobigwig False Installed iuc 98704d357ede 9
Install 1633 26/09/24 12:16:29 gtdbtk_classify_wf False Installed iuc 5c7ba3d85a01 latest 1/1 Metagenomic Analysis toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/install_build_1633/install_log.txt
Install 1635 30/09/24 13:54:31 metaphlan False Installed iuc 740fd2d16a28 740fd2d16a28 Metagenomic Analysis toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/install_build_1635/install_log.txt
Install 1635 30/09/24 14:04:57 overlay_images False Installed imgteam ca362a9bfa20 ca362a9bfa20 Imaging toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/install_build_1635/install_log.txt
Install 1639 30/09/24 18:06:02 metaphlan False Installed iuc ec368db926f4 ec368db926f4 Metagenomic Analysis toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/install_build_1639/install_log.txt
7 changes: 0 additions & 7 deletions requests/gta2024_microGalaxy.yml

This file was deleted.

136 changes: 68 additions & 68 deletions staging.gvl.org.au/annotation.yml
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Expand Up @@ -2,11 +2,11 @@ tools:
- name: abricate
owner: iuc
revisions:
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- 3f3e247c053d
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tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: aegean_canongff3
Expand All @@ -26,8 +26,8 @@ tools:
- name: aegean_locuspocus
owner: iuc
revisions:
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- 1fdc517743e6
- c4ac24510b55
tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: aegean_parseval
Expand All @@ -40,16 +40,16 @@ tools:
- name: annotatemyids
owner: iuc
revisions:
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tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: antismash
Expand All @@ -63,33 +63,33 @@ tools:
owner: bgruening
revisions:
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- dc027fa56d55
- 7be22100e5e1
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tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: augustus
owner: bgruening
revisions:
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- 09855551d713
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tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: bakta
owner: iuc
revisions:
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tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: barrnap
owner: iuc
revisions:
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tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: braker3
Expand All @@ -101,8 +101,8 @@ tools:
- name: chipseeker
owner: rnateam
revisions:
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tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: compleasm
Expand All @@ -114,17 +114,17 @@ tools:
- name: cpat
owner: bgruening
revisions:
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tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: eggnog_mapper
owner: galaxyp
revisions:
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tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: exonerate
Expand All @@ -148,61 +148,61 @@ tools:
- name: funannotate_annotate
owner: iuc
revisions:
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tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: funannotate_clean
owner: iuc
revisions:
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tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
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owner: iuc
revisions:
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tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: funannotate_predict
owner: iuc
revisions:
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tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: funannotate_sort
owner: iuc
revisions:
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tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: get_orfs_or_cdss
Expand All @@ -214,9 +214,9 @@ tools:
- name: gff_to_prot
owner: iuc
revisions:
- 2aea122fbd25
- 79261884facd
- 07d7991bf205
- 79261884facd
- 2aea122fbd25
tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: goenrichment
Expand All @@ -228,10 +228,10 @@ tools:
- name: goseq
owner: iuc
revisions:
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tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: goslimmer
Expand All @@ -255,16 +255,16 @@ tools:
- name: infernal
owner: bgruening
revisions:
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tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: interproscan
owner: bgruening
revisions:
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- c55643c3d813
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tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: jcvi_gff_stats
Expand All @@ -282,26 +282,26 @@ tools:
- name: maker_map_ids
owner: iuc
revisions:
- e906fa778440
- 326f9c294b09
- e906fa778440
tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: maker
owner: iuc
revisions:
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tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: mitos2
owner: iuc
revisions:
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tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: mob_suite
Expand Down Expand Up @@ -343,11 +343,11 @@ tools:
- name: prokka
owner: crs4
revisions:
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tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: red
Expand All @@ -359,15 +359,15 @@ tools:
- name: repeat_masker
owner: bgruening
revisions:
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tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: repeatmodeler
owner: csbl
revisions:
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tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: sanntis_marine
Expand All @@ -391,22 +391,22 @@ tools:
- name: snpeff
owner: iuc
revisions:
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tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: snpsift
owner: iuc
revisions:
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tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: snptools
Expand All @@ -418,8 +418,8 @@ tools:
- name: sortmerna
owner: rnateam
revisions:
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tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: tbl2gff3
Expand All @@ -431,24 +431,24 @@ tools:
- name: tbprofiler
owner: iuc
revisions:
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tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: transit_gumbel
owner: iuc
revisions:
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- f50807720df1
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tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: transit_hmm
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