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  • sorterhat Public

    Random picker of colorful boxes. Useful for some!

    JavaScript 1 Updated Feb 6, 2025
  • biopython Public

    Forked from biopython/biopython

    Official git repository for Biopython (converted from CVS)

    Python 12 8 Other Updated Jun 27, 2024
  • Personal Webpage - João Rodrigues

    HTML Updated Jun 11, 2024
  • dotfiles Public

    Keep dotfiles under (version-)control to make installation and undoing easier.

    Vim Script Updated Mar 8, 2024
  • A curated list of resources for using LLMs to develop more competitive grant applications.

    Python 2 Creative Commons Attribution 4.0 International Updated Mar 1, 2024
  • Wedding Website

    SCSS Updated Jul 30, 2023
  • A conda-smithy repository for biopython.

    BSD 3-Clause "New" or "Revised" License Updated Feb 13, 2023
  • biopython-docs Public

    Forked from biopython/docs

    Repository for automatically deploying the Biopython documentation

    HTML Updated Feb 13, 2023
  • pydca Public

    [DEPRECATED] Library to analyse MSAs

    Python MIT License Updated Dec 26, 2022
  • Python 1 MIT License Updated Dec 8, 2022
  • Script to calculate hydrophobic moment and other basic properties from protein sequences

    Python 8 MIT License Updated Jul 13, 2022
  • CE Public

    Forked from kad-ecoli/CE

    Original Code for Combinatorial Extension (CE) Alignment

    C Updated Jul 1, 2022
  • mdtraj Public

    Forked from mdtraj/mdtraj

    A modern, open library for the analysis of molecular dynamics trajectories

    C 1 GNU Lesser General Public License v2.1 Updated Jun 28, 2022
  • pdb-tools Public

    Forked from haddocking/pdb-tools

    Set of Python scripts designed to be a dependency-free cross-platform swiss army knife for PDB files.

    Python 26 5 Apache License 2.0 Updated Jun 23, 2022
  • Content for policy/instructional pages of the Living Journal of Computational Molecular Science (LiveCoMS)

    SCSS Updated May 5, 2022
  • Templates for use in preparing articles for the Living Journal of Computational Molecular Sciences (LiveCoMS)

    TeX Creative Commons Attribution 4.0 International Updated Jan 20, 2022
  • interfacea Public

    An open-source library for the analysis of protein interactions.

    Python 29 5 Apache License 2.0 Updated Dec 5, 2021
  • MDAnalysis is a Python library to analyze molecular dynamics trajectories.

    Python Other Updated Nov 22, 2021
  • fcc Public

    Forked from haddocking/fcc

    Fraction of Common Contacts Clustering Algorithm for Protein Structures

    Python 3 2 MIT License Updated Sep 18, 2021
  • Automated compilation of Python wheel binary packages for Biopython

    Shell BSD 3-Clause "New" or "Revised" License Updated Jun 1, 2021
  • prie Public

    Python GNU Lesser General Public License v3.0 Updated Feb 27, 2021
  • Updated protocols to model ACE2:RBD variants.

    Python MIT License Updated Jan 8, 2021
  • nmaJS Public

    Normal Mode Analysis of Protein Structure implemented in JavaScript

    JavaScript 2 MIT License Updated Oct 16, 2020
  • Scripts to benchmark Bio.PDB

    Python 1 Apache License 2.0 Updated Sep 4, 2020
  • kdbush Public

    Forked from mourner/kdbush

    A fast static index for 2D points

    JavaScript ISC License Updated Aug 24, 2020
  • Python Apache License 2.0 Updated Aug 14, 2020
  • SUtools Public

    Forked from bnaras/SUtools

    Tools for autogenerating fortran registration code

    R Updated Aug 8, 2020
  • Python 3 Updated Jul 21, 2020
  • A short introductory tutorial to conda environments.

    CSS 2 Creative Commons Attribution 4.0 International Updated Jun 12, 2020
  • atomic-distance-template Public template

    Template Repository for JS assignment

    JavaScript Updated Jun 8, 2020