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New prefix: psskb #1398

Merged
merged 10 commits into from
Feb 13, 2025
Merged

New prefix: psskb #1398

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7f6897c
Add psskb as provider for pdb and uniprot
nalikapalayoor Feb 1, 2025
0b4321a
Update PR number
nalikapalayoor Feb 1, 2025
8e05f90
Remove psskb as provider, add as prefix using motif ID
nalikapalayoor Feb 7, 2025
1593520
Lint and fix error for uri format
nalikapalayoor Feb 7, 2025
b1ca770
Add contact info for psskb
nalikapalayoor Feb 8, 2025
2e842ce
Update contact info
nalikapalayoor Feb 12, 2025
5f5f6e3
Update PSSKB description
bgyori Feb 12, 2025
7f8eb8f
Add reviewer info
bgyori Feb 12, 2025
a50874e
Fix ORCID
bgyori Feb 12, 2025
c630a44
Merge remote-tracking branch 'origin/main' into psskb
bgyori Feb 12, 2025
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30 changes: 30 additions & 0 deletions src/bioregistry/data/bioregistry.json
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Original file line number Diff line number Diff line change
Expand Up @@ -88335,6 +88335,21 @@
}
],
"uri_format": "https://seq2fun.dcmb.med.umich.edu/furna/pdb.cgi?pdbid=$1"
},
{
"code": "psskb",
"description": "PSSKB allows researchers to model post translational modifications and amino acid substitutions in proteins, providing 3D structural representations. This tool is important for studying how modifications impact protein stability, localization, and function.",
"homepage": "https://psskb.org/",
"name": "Protein Structure and Stability Knowledge Base",
"publications": [
{
"doi": "10.1002/jcc.70046",
"pubmed": "39876062",
"title": "PSSKB: A Web Application to Study Protein Structures",
"year": 2025
}
],
"uri_format": "https://www.rcsb.org/structure/$1"
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}
],
"publications": [
Expand Down Expand Up @@ -116924,6 +116939,21 @@
}
],
"uri_format": "http://165.194.60.211:9006/detail/$1"
},
{
"code": "psskb",
"description": "PSSKB allows researchers to model post translational modifications and amino acid substitutions in proteins, providing 3D structural representations. This tool is important for studying how modifications impact protein stability, localization, and function.",
"homepage": "https://psskb.org/",
"name": "Protein Structure and Stability Knowledge Base",
"publications": [
{
"doi": "10.1002/jcc.70046",
"pubmed": "39876062",
"title": "PSSKB: A Web Application to Study Protein Structures",
"year": 2025
}
],
"uri_format": "https://www.uniprot.org/uniprotkb/$1/entry"
}
],
"publications": [
Expand Down
1 change: 1 addition & 0 deletions src/bioregistry/data/curated_papers.tsv
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Original file line number Diff line number Diff line change
Expand Up @@ -169,3 +169,4 @@ pubmed relevant orcid date_curated relevancy_type pr_added notes
39728342 0 0009-0008-8406-631X 2025-01-17 non_resource_paper 1364
39729356 0 0009-0008-8406-631X 2025-01-14 not_identifiers_resource 1364
39732706 0 0009-0008-8406-631X 2025-01-10 not_identifiers_resource 1351
39876062 1 0009-0008-8406-631x 2025-02-01 new_provider 1398
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