Update learnmsa

[luisas]

Fix LEARNMSA align module.

The previous container was not the complete one. This caused the tool to crash given certain optional flags (e.g. --use_language_model). Now it is the official one.

It cannot be done in seqera containers because of Gaius-Augustus/learnMSA#18

Since the original container is 13GB - the tests are run in stub and in a smaller container.

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[mirpedrol]

I left some small comments, otherwise LGTM

[mirpedrol]

the file name should end with .yml, not .yaml, for consistency.

[luisas]

uh upsi yes! thanksss

[mirpedrol]

am I understanding well that the output will never be compressed now?

Suggested change

	tuple val(meta), path("*.aln{.gz,}"), emit: alignment
	tuple val(meta), path("*.aln"), emit: alignment

[mirpedrol]

If you change this, the meta.yml will have to change too

[luisas]

Ah ups yes, i forgot to update the meta! I just removed the compressed flag

Yes now i moved the compression outside - so i have a module in the MSA pipeline doing the compression for learnmsa :)