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Pull requests: nf-core/modules

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Pull requests list

Update to LAST version 1608 using sequera containers.
#7341 opened Jan 22, 2025 by charles-plessy Loading…
11 of 17 tasks
1
Upgrade simpleaf modules to 0.18.4
#7335 opened Jan 20, 2025 by an-altosian Loading…
10 of 17 tasks
1
Update print format of BBMAP/repair.sh version Ready for Review update module
#7332 opened Jan 18, 2025 by mazzalab Loading…
1
@mazzalab
fix and bump gfastats help wanted Extra attention is needed
#7320 opened Jan 16, 2025 by fellen31 • Draft
17 tasks
2
Added 2FAST2Q module
#7318 opened Jan 16, 2025 by afombravo Loading…
20
Update odgi to version 0.9.0 Ready for Review
#7313 opened Jan 15, 2025 by heuermh Loading…
17 tasks
1
14
Update purecn/coverage to nf-test
#7308 opened Jan 15, 2025 by SPPearce Loading…
1
Swap transdecoder predict to nf-test Ready for Review
#7296 opened Jan 13, 2025 by SPPearce Loading…
Report warning message when analyzing data with two replicates
#7289 opened Jan 10, 2025 by Xinlei-Gao Loading…
17 tasks
9
[DO NOT MERGE] Test dynamic sharding step
#7274 opened Jan 7, 2025 by mashehu Loading…
3
Baysor module
#7270 opened Jan 7, 2025 by sebgoti Loading…
6
Add new module decoupler/progeny
#7263 opened Dec 26, 2024 by atrigila • Draft
17 tasks
2
PINTS Updates
#7261 opened Dec 23, 2024 by edmundmiller Loading…
@edmundmiller
Fix: arriba: rename argument and reorder alphabetically
#7255 opened Dec 20, 2024 by rannick Loading…
7 of 17 tasks
4
add subworkflow for functional enrichment analysis
#7254 opened Dec 20, 2024 by suzannejin Loading…
17 tasks
9
New kma module help wanted Extra attention is needed new module Adding a new module nf-test
#7251 opened Dec 19, 2024 by Krannich479 Loading…
13 of 14 tasks
@Krannich479
38
READY FOR REVIEW: Adapt output declarations
#7244 opened Dec 18, 2024 by simoxb Loading…
13 tasks
2
Add functionality for --unknown-slide in spaceranger/count
#7233 opened Dec 17, 2024 by fasterius Loading…
1 task done
9
added basicpy nftest
#7228 opened Dec 16, 2024 by kbestak Loading…
10 of 14 tasks
1
3
Move Changes action locally
#7223 opened Dec 13, 2024 by edmundmiller • Draft
@edmundmiller
4
DUMMY DELETE ME: Test if UNTAR fails on self_hosted runners
#7216 opened Dec 13, 2024 by jfy133 • Draft
17 tasks
Fix abritamr/run ready to merge
#7176 opened Dec 7, 2024 by sateeshperi Loading…
@sateeshperi
6
Limit Trimgalore to 15 cpus
#7173 opened Dec 6, 2024 by edmundmiller Loading…
@edmundmiller
2
Update DeepVariant
#7171 opened Dec 6, 2024 by fellen31 • Draft
17 tasks
@fellen31
3
Bcl2fastq bump
#7161 opened Dec 4, 2024 by edmundmiller • Draft
@edmundmiller
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