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@ghga-de GHGA - The German Human Genome-Phenome Archive

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    84 repositories

    • work-package-service

      Public
      Service that handles work packages for the CLI client
      Python
      •
      Apache License 2.0
      •0•0•0•1•Updated Dec 24, 2024Dec 24, 2024

    • file-services-backend

      Public
      Python
      •
      Apache License 2.0
      •0•0•0•2•Updated Dec 24, 2024Dec 24, 2024

    • ghga-connector

      Public
      CLI - Client to perform up- and download operations to and from a local ghga instance
      Python
      •
      Apache License 2.0
      •0•0•0•1•Updated Dec 24, 2024Dec 24, 2024

    • data-portal

      Public
      GHGA Data Portal v2
      TypeScript
      •
      Other
      •0•0•0•2•Updated Dec 20, 2024Dec 20, 2024

    • docs.ghga.de

      Public
      GHGA User Documentation
      Python
      •
      Apache License 2.0
      •1•1•0•4•Updated Dec 20, 2024Dec 20, 2024

    • ghga-metadata-schema

      Public
      Metadata schema for the German Human Genome-Phenome Archive (GHGA)
      metadata-schemalinkmlghgafega
      Python
      •
      Apache License 2.0
      •4•13•5•2•Updated Dec 17, 2024Dec 17, 2024

    • metldata

      Public
      A framework for handling metadata based on ETL, CQRS, and event sourcing.
      Python
      •
      Apache License 2.0
      •0•1•0•0•Updated Dec 17, 2024Dec 17, 2024

    • ghga-datasteward-kit

      Public
      GHGA-internal scripts to be used by data stewards.
      Python
      •
      Apache License 2.0
      •0•1•0•1•Updated Dec 17, 2024Dec 17, 2024

    • charts

      Public
      Smarty
      •0•0•0•0•Updated Dec 16, 2024Dec 16, 2024

    • auth-service

      Public
      Authentication service for the GHGA data portal used by the API gateway via the ExtAuth protocol
      Python
      •
      Apache License 2.0
      •0•2•0•2•Updated Dec 16, 2024Dec 16, 2024

    • hexkit

      Public
      A chassis library for building domain-focused, infrastructure-agnostic and event-driven microservices in Python.
      Python
      •
      Apache License 2.0
      •0•5•0•1•Updated Dec 13, 2024Dec 13, 2024

    • gh-action-ci

      Public
      Common steps executed within CI pipelines of GHGA.
      Dockerfile
      •
      Apache License 2.0
      •0•0•0•0•Updated Dec 13, 2024Dec 13, 2024

    • gh-action-pypi

      Public
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Dec 13, 2024Dec 13, 2024

    • ghga-transpiler

      Public
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Dec 12, 2024Dec 12, 2024

    • schemapack

      Public
      Make your JSON Schemas sociable and create linked data model.
      Python
      •
      Apache License 2.0
      •0•2•1•1•Updated Dec 11, 2024Dec 11, 2024

    • ghga-service-commons

      Public
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Dec 11, 2024Dec 11, 2024

    • epic-docs

      Public
      Documentation and plans for service development milestones
      Shell
      •
      Apache License 2.0
      •1•0•0•2•Updated Dec 11, 2024Dec 11, 2024

    • notification-service

      Public
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Nov 27, 2024Nov 27, 2024

    • microservice-repository-template

      Public template
      A template for Python-based microservice repositories with continuous update delivery.
      Python
      •
      Apache License 2.0
      •2•0•0•0•Updated Nov 27, 2024Nov 27, 2024

    • state-management-service

      Public
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Nov 26, 2024Nov 26, 2024

    • notification-orchestration-service

      Public
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Nov 21, 2024Nov 21, 2024

    • data-portal-ui

      Public
      GHGA Data Portal v1
      TypeScript
      •
      Apache License 2.0
      •0•0•0•0•Updated Nov 19, 2024Nov 19, 2024

    • mass

      Public
      A service for searching metadata artifacts and filtering results.
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Nov 13, 2024Nov 13, 2024

    • access-request-service

      Public
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Nov 13, 2024Nov 13, 2024

    • nf-snvcalling

      Public
      a Nextflow SNV calling and annotation pipeline based on DKFZ-ODCF/SNVCallingWorkflow
      somatic-variantssomatic-mutationssnvsnv-annotationdkfzghgasnv-callodcf
      Python
      •
      MIT License
      •0•1•5•0•Updated Nov 12, 2024Nov 12, 2024

    • nf-platypusindelcalling

      Public
      This page is reserved for NextFlow based Indell Calling Workflow (with Platypus) from DKFZ
      workflowpipelineannotationnextflowsomatic-variantsannotationsvariant-callingsomatic-mutationsplatypusnextflow-pipeline
      Python
      •
      MIT License
      •0•1•6•0•Updated Nov 12, 2024Nov 12, 2024

    • well-known-value-service

      Public
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Nov 8, 2024Nov 8, 2024

    • homogeneous-data-processing

      Public
      Jupyter Notebook
      •1•1•3•0•Updated Oct 18, 2024Oct 18, 2024

    • dataset-information-service

      Public
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Oct 14, 2024Oct 14, 2024

    • beacon2-ri-api

      Public
      This is the v2 Beacon Reference Implementation deployed at GHGA. For the base implementation please see https://github.com/EGA-archive/beacon2-ri-api/
      JavaScript
      •
      Apache License 2.0
      •38•0•0•0•Updated Jul 31, 2024Jul 31, 2024