Merge pull request #9559 from satijalab/fix/umap-learn-version-check

Fix/umap-learn version check

DESCRIPTION

@@ -1,5 +1,5 @@
 Package: Seurat
-Version: 5.1.0.9010
+Version: 5.1.0.9011
 Title: Tools for Single Cell Genomics
 Description: A toolkit for quality control, analysis, and exploration of single cell RNA sequencing data. 'Seurat' aims to enable users to identify and interpret sources of heterogeneity from single cell transcriptomic measurements, and to integrate diverse types of single cell data. See Satija R, Farrell J, Gennert D, et al (2015) <doi:10.1038/nbt.3192>, Macosko E, Basu A, Satija R, et al (2015) <doi:10.1016/j.cell.2015.05.002>, Stuart T, Butler A, et al (2019) <doi:10.1016/j.cell.2019.05.031>, and Hao, Hao, et al (2020) <doi:10.1101/2020.10.12.335331> for more details.
 Authors@R: c(

NEWS.md

@@ -1,6 +1,7 @@
 # Unreleased
 
 ## Changes
+- Updated `RunUMAP` to support `umap-learn` version >= 0.5.0 ([#9559](https://github.com/satijalab/seurat/pull/9559))
 - Surfaced more fine-grained control over what parts of a Xenium experiment are loaded in `LoadXenium`
 - Added ability to load Xenium nucleus segmentation masks
 - Updated `LoadXenium` to also read some run metadata (run start time, preservation method, panel used, organism, tissue type, instrument software version and stain kit used) into `misc` slot
@@ -238,6 +239,7 @@
 - Add `rlsi` option for `FindIntegrationAnchors()`
 
 ## Changes
+- 
 - Preserve feature metadata when converting from `SingleCellExperiment` to `SeuratObject` class
 ([#4205](https://github.com/satijalab/seurat/issues/4205))
 - Preserve multiple assays when converting from `SingleCellExperiment` to `SeuratObject` class

R/dimensional_reduction.R

@@ -1370,7 +1370,7 @@ RunUMAP.default <- function(
       umap_import <- import(module = "umap", delay_load = TRUE)
       sklearn <- import("sklearn", delay_load = TRUE)
       if (densmap &&
-          numeric_version(x = umap_import$pkg_resources$get_distribution("umap-learn")$version) <
+          numeric_version(x = umap_import$`__version__`) <
           numeric_version(x = "0.5.0")) {
         stop("densmap is only supported by versions >= 0.5.0 of umap-learn. Upgrade umap-learn (e.g. pip install --upgrade umap-learn).")
       }
@@ -1394,7 +1394,7 @@ RunUMAP.default <- function(
         angular_rp_forest = angular.rp.forest,
         verbose = verbose
       )
-      if (numeric_version(x = umap_import$pkg_resources$get_distribution("umap-learn")$version) >=
+      if (numeric_version(x = umap_import$`__version__`) >=
           numeric_version(x = "0.5.0")) {
         umap.args <- c(umap.args, list(
           densmap = densmap,
@@ -1613,7 +1613,7 @@ RunUMAP.Graph <- function(
     metric_kwds = metric.kwds,
     verbose = verbose
   )
-  if (numeric_version(x = umap$pkg_resources$get_distribution("umap-learn")$version) >=
+  if (numeric_version(x = umap$`__version__`) >=
       numeric_version(x = "0.5.0")) {
     umap.args <- c(umap.args, list(
       densmap = densmap,