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University of California, San Diego
- San Diego
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17:17
- 8h behind - https://jianshu93.github.io/blog/about/
- @jansue_chao
- in/jianshu-zhao-9a14a021a
- https://scholar.google.com/citations?user=XFhxv0gAAAAJ&hl=en
- https://knightlab.ucsd.edu/wordpress/?page_id=47
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annembed Public
Forked from jean-pierreBoth/annembeddata embedding based on approximate nearest neighbour
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gsearch Public
Forked from jean-pierreBoth/gsearchApproximate nearest neighbour search for microbial genomes based on hash metric
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bioconda-recipes Public
Forked from bioconda/bioconda-recipesConda recipes for the bioconda channel.
Shell MIT License UpdatedFeb 8, 2025 -
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flatnav Public
Forked from BlaiseMuhirwa/flatnavFast and minimal header-only graph-based index for approximate nearest neighbor search (ANNS). https://blaisemuhirwa.github.io/flatnav
C++ Apache License 2.0 UpdatedFeb 2, 2025 -
bindashtree Public
Binwise Densified MinHash and Rapid Neighbor-joining Tree Construction for microbial genomes
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simd-minimizers Public
Forked from rust-seq/simd-minimizersCompute minimizers fast, using SIMD
Rust UpdatedJan 29, 2025 -
sam_filter Public
Filter SAM file by sequence identity and alignment ratio
Rust UpdatedJan 27, 2025 -
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hypermash Public
Fast and Memory Efficient Genome Sketching via HyperMinHash
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kmerutils Public
Forked from jean-pierreBoth/kmerutilsKmer generating, counting hashing and related
Rust UpdatedJan 16, 2025 -
q2-dada2 Public
Forked from qiime2/q2-dada2QIIME 2 plugin wrapping DADA2
Python BSD 3-Clause "New" or "Revised" License UpdatedJan 13, 2025 -
minimizers Public
Forked from RagnarGrootKoerkamp/minimizersMeasure experimental density of bd-anchors
Rust UpdatedJan 11, 2025 -
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sparse_features Public
Simulate sparse features for microbiome data analysis
Rust UpdatedJan 10, 2025 -
roaring-rs Public
Forked from RoaringBitmap/roaring-rsA better compressed bitset in Rust
Rust Apache License 2.0 UpdatedJan 9, 2025 -
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pyani-plus Public
Forked from pyani-plus/pyani-plusDevelopment repo for pyani-plus (the next iteration of pyani)
Python MIT License UpdatedJan 7, 2025 -
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unifeb Public
UniFrac Embedding via Approximate Nearest Neighbor Graph
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hnswlib-rs Public
Forked from jean-pierreBoth/hnswlib-rsRust implementation of the HNSW algorithm (Malkov-Yashunin)
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Autocycler Public
Forked from rrwick/AutocyclerA tool for generating consensus long-read assemblies for bacterial genomes
Rust GNU General Public License v3.0 UpdatedDec 31, 2024 -
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PCAone Public
Forked from Zilong-Li/PCAoneFast, Accurate and Memory-Efficient Principal Component Analysis All in One
C++ GNU General Public License v3.0 UpdatedDec 27, 2024